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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4ram PNM Metallo-beta-lactamase type 2

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4ram PNMMetallo-beta-lactamase type 2 / 0.972
4eyf PNKMetallo-beta-lactamase type 2 / 0.903
4ey2 0RMMetallo-beta-lactamase type 2 / 0.843
4eyb 0WOMetallo-beta-lactamase type 2 / 0.843
4hl2 ZZ7Metallo-beta-lactamase type 2 / 0.774
4h0d ZZ7Metallo-beta-lactamase type 2 / 0.761
1jjt BDSBeta-lactamase / 0.663
4raw ZZ7Metallo-beta-lactamase type 2 / 0.659
3bxz ADPProtein translocase subunit SecA / 0.651