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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4r2l ATP Universal stress protein F

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4r2l ATPUniversal stress protein F / 1.117
1mjh ATPUniversal stress protein MJ0577 / 0.843
2z08 ATPUniversal stress protein family / 0.830
3ab8 ATPUncharacterized protein / 0.817
3s3t ATPUniversal stress protein / 0.761
3cis ATPUniversal stress protein Rv2623 / 0.725
3n0z 3ATAdenylate cyclase 2 / 0.691
2w5a ADPSerine/threonine-protein kinase Nek2 2.7.11.1 0.669
3ncr ADPNitrogen regulatory protein P-II (GlnB-2) / 0.663
2v9j ATP5'-AMP-activated protein kinase subunit gamma-1 / 0.658
3q2k NAIProbable oxidoreductase / 0.655
1sxj AGSReplication factor C subunit 1 / 0.653
2ixb NADAlpha-N-acetylgalactosaminidase 3.2.1.49 0.652