Binding Modes are compared using Grim.
For more information, please see the following publication:
Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65
PDB ID | HET | Uniprot Name | EC Number |
---|---|---|---|
4r29 | SAM | Uncharacterized protein |
PDB ID | HET | Uniprot Name | EC Number | Binding Mode Similarity |
Align |
---|---|---|---|---|---|
4r29 | SAM | Uncharacterized protein | / | 1.105 | |
2qs3 | UBE | Glutamate receptor ionotropic, kainate 1 | / | 0.695 | |
2qs1 | UB1 | Glutamate receptor ionotropic, kainate 1 | / | 0.683 | |
2ojt | UBA | Glutamate receptor ionotropic, kainate 1 | / | 0.678 | |
4ie0 | PD2 | Alpha-ketoglutarate-dependent dioxygenase FTO | / | 0.672 | |
3rt8 | CWD | Glutamate receptor 3 | / | 0.664 | |
2eg8 | FOT | Dihydroorotase | 3.5.2.3 | 0.658 | |
1cl2 | PPG | Cystathionine beta-lyase MetC | 4.4.1.8 | 0.656 | |
2ptm | CMP | Hyperpolarization-activated (Ih) channel | / | 0.655 |