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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4qvh COA Phosphopantetheinyl transferase PptT (CoA:APO-[ACP]pantetheinephosphotransferase) (CoA:APO-[acyl-carrier protein]pantetheinephosphotransferase)

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4qvh COAPhosphopantetheinyl transferase PptT (CoA:APO-[ACP]pantetheinephosphotransferase) (CoA:APO-[acyl-carrier protein]pantetheinephosphotransferase) / 1.380
4qjl COAPhosphopantetheinyl transferase, PptII / 1.140
4qjk COAPhosphopantetheinyl transferase PptT (CoA:APO-[ACP]pantetheinephosphotransferase) (CoA:APO-[acyl-carrier protein]pantetheinephosphotransferase) / 1.046
2wat COAFatty acid synthase subunit alpha 2.3.1.86 0.728
3qmn COAHolo-[acyl-carrier-protein] synthase / 0.691
1qr0 COA4'-phosphopantetheinyl transferase sfp 2.7.8 0.680
1rqj RISFarnesyl diphosphate synthase 2.5.1.10 0.663
1t8x PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.661
2c43 COAL-aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase 2.7.8 0.650