sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
Binding Modes are compared using Grim.
For more information, please see the following publication:
Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 4qem | HC4 | Phospholipase A2 VRV-PL-VIIIa |
| PDB ID | HET | Uniprot Name | EC Number | Binding Mode Similarity |
Align |
|---|---|---|---|---|---|
| 1n35 | CH1 | RNA-directed RNA polymerase lambda-3 | 2.7.7.48 | 0.744 | |
| 1n38 | U3H | RNA-directed RNA polymerase lambda-3 | 2.7.7.48 | 0.744 | |
| 1wet | GUN | HTH-type transcriptional repressor PurR | / | 0.744 | |
| 1xxj | UNC | Uricase | 1.7.3.3 | 0.744 | |
| 2fzk | CTP | Aspartate carbamoyltransferase regulatory chain | / | 0.744 | |
| 2jey | HLO | Acetylcholinesterase | 3.1.1.7 | 0.744 | |
| 2oap | ANP | Type II secretion system protein (GspE-2) | / | 0.744 | |
| 3f8p | NAD | NADH oxidase/thioredoxin reductase | / | 0.744 | |
| 3f8r | NAP | NADH oxidase/thioredoxin reductase | / | 0.744 | |
| 3fzf | ATP | Heat shock cognate 71 kDa protein | / | 0.744 | |
| 3u9d | ATP | Actin, alpha skeletal muscle | / | 0.744 | |
| 3ypi | PGH | Triosephosphate isomerase | 5.3.1.1 | 0.744 | |
| 3zzn | ADP | L-lactate dehydrogenase | / | 0.744 | |
| 4e5l | DBH | Polymerase acidic protein | / | 0.744 | |
| 5bnt | NAP | Aspartate-semialdehyde dehydrogenase | 1.2.1.11 | 0.744 | |
| 4qem | HC4 | Phospholipase A2 VRV-PL-VIIIa | / | 0.737 | |
| 4qer | STL | Phospholipase A2 VRV-PL-VIIIa | / | 0.668 | |
| 1fp6 | ADP | Nitrogenase iron protein 1 | 1.18.6.1 | 0.660 | |
| 1h48 | C5P | 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase | 4.6.1.12 | 0.660 | |
| 1yra | GDP | GPN-loop GTPase PAB0955 | / | 0.660 | |
| 2hs4 | ACP | Phosphoribosylformylglycinamidine synthase subunit PurL | / | 0.660 | |
| 2puf | GUN | HTH-type transcriptional repressor PurR | / | 0.660 | |
| 2xtn | GTP | GTPase IMAP family member 2 | / | 0.660 | |
| 3fwy | ADP | Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein | / | 0.660 | |
| 4cdg | ADP | Bloom syndrome protein | 3.6.4.12 | 0.660 | |
| 4nxx | GDP | Mitochondrial dynamics protein MID51 | / | 0.660 | |
| 4o3m | ADP | Bloom syndrome protein | 3.6.4.12 | 0.660 | |
| 5i9e | ATP | Actin-related protein 4 | / | 0.660 | |
| 5ero | 210 | Fusicoccadiene synthase | 2.5.1.29 | 0.653 | |
| 3hz6 | ADP | Xylulokinase | / | 0.652 |