Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4qbj NHM Glycylpeptide N-tetradecanoyltransferase 2.3.1.97

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4qbj NHMGlycylpeptide N-tetradecanoyltransferase 2.3.1.97 1.701
4cax MYAGlycylpeptide N-tetradecanoyltransferase 2.3.1.97 1.231
4cav MYAGlycylpeptide N-tetradecanoyltransferase 2.3.1.97 1.220
4a32 MYAGlycylpeptide N-tetradecanoyltransferase / 1.069
2nmt NHMGlycylpeptide N-tetradecanoyltransferase 2.3.1.97 1.065
2wuu NHWGlycylpeptide N-tetradecanoyltransferase / 1.057
4a33 MYAGlycylpeptide N-tetradecanoyltransferase / 1.012
5a27 MYAGlycylpeptide N-tetradecanoyltransferase / 1.011
5ag6 MYAGlycylpeptide N-tetradecanoyltransferase / 1.011
4c2z MYAGlycylpeptide N-tetradecanoyltransferase 1 / 1.007
4a31 MYAGlycylpeptide N-tetradecanoyltransferase / 1.006
4ucn MYAGlycylpeptide N-tetradecanoyltransferase / 1.004
4a2z MYAGlycylpeptide N-tetradecanoyltransferase / 0.997
5a28 MYAGlycylpeptide N-tetradecanoyltransferase / 0.991
4a30 MYAGlycylpeptide N-tetradecanoyltransferase / 0.986
4a95 NHWGlycylpeptide N-tetradecanoyltransferase / 0.982
4b10 NHWGlycylpeptide N-tetradecanoyltransferase / 0.971
1iid NHMGlycylpeptide N-tetradecanoyltransferase 2.3.1.97 0.967
5ag5 MYAGlycylpeptide N-tetradecanoyltransferase / 0.966
2yne NHWGlycylpeptide N-tetradecanoyltransferase / 0.961
4c2x NHWGlycylpeptide N-tetradecanoyltransferase 2 / 0.944
5ag7 MYAGlycylpeptide N-tetradecanoyltransferase / 0.942
5ag4 MYAGlycylpeptide N-tetradecanoyltransferase / 0.940
2wsa MYAGlycylpeptide N-tetradecanoyltransferase / 0.929
4cgp MYAGlycylpeptide N-tetradecanoyltransferase / 0.919
4b12 NHWGlycylpeptide N-tetradecanoyltransferase / 0.918
4bbh NHWGlycylpeptide N-tetradecanoyltransferase / 0.913
4c2y MYAGlycylpeptide N-tetradecanoyltransferase 1 / 0.902
2ync YNCGlycylpeptide N-tetradecanoyltransferase / 0.900
4b11 NHWGlycylpeptide N-tetradecanoyltransferase / 0.888
4b13 NHWGlycylpeptide N-tetradecanoyltransferase / 0.875
4b14 NHWGlycylpeptide N-tetradecanoyltransferase / 0.866
4c68 NHWGlycylpeptide N-tetradecanoyltransferase / 0.787
3zbt FADFerredoxin--NADP reductase 1.18.1.2 0.669
5hyr ESTEstrogen receptor / 0.651