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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4qak 2AM RNA 2',3'-cyclic phosphodiesterase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4qak 2AMRNA 2',3'-cyclic phosphodiesterase / 1.008
2yoz OVE2',3'-cyclic-nucleotide 3'-phosphodiesterase 3.1.4.37 0.676
4h6p FMNChromate reductase / 0.676
2yq9 2AM2',3'-cyclic-nucleotide 3'-phosphodiesterase 3.1.4.37 0.667
4luh DIUSerum albumin / 0.664
1w4z NAPPutative ketoacyl reductase 1.3.1 0.662
1ja1 NAPNADPH--cytochrome P450 reductase / 0.654
3zbs OVE2',3'-cyclic-nucleotide 3'-phosphodiesterase 3.1.4.37 0.654
4wdg A2P2',3'-cyclic-nucleotide 3'-phosphodiesterase 3.1.4.37 0.654
3lzx NAPFerredoxin--NADP reductase 2 1.18.1.2 0.650