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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4q71 FAD Bifunctional protein PutA

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4q71 FADBifunctional protein PutA / 1.444
3haz FADBifunctional protein PutA / 1.407
4q73 FADBifunctional protein PutA / 1.381
4q72 FADBifunctional protein PutA / 1.369
2fzn FADBifunctional protein PutA 1.5.5.2 1.265
4o8a FADBifunctional protein PutA 1.2.1.88 1.255
1tj1 FADBifunctional protein PutA 1.5.5.2 1.231
4nm9 FADBifunctional protein PutA / 1.229
1tj2 FADBifunctional protein PutA 1.5.5.2 1.225
1tj0 FADBifunctional protein PutA 1.5.5.2 1.224
2fzm FADBifunctional protein PutA 1.5.5.2 1.198
4nmb FADBifunctional protein PutA / 1.179
4nmd FDABifunctional protein PutA / 1.116
3e2s FADBifunctional protein PutA 1.5.5.2 1.103
4nmc FADBifunctional protein PutA / 1.049
4h6r FDAProline dehydrogenase / 0.842
2g37 FADProline dehydrogenase / 0.820
4hia FMNLOV protein / 0.713
3d72 FADVivid PAS protein VVD / 0.686
4hj4 FMNLOV protein / 0.683
3oc4 FADOxidoreductase, pyridine nucleotide-disulfide family / 0.681
2o12 FMNChorismate synthase / 0.676
3gdp FAD(R)-mandelonitrile lyase 2 4.1.2.10 0.676
1qxo FMNChorismate synthase / 0.671
3n39 FMNProtein NrdI / 0.671
3cn8 FADPolyamine oxidase FMS1 / 0.666
4o5q FADAlkyl hydroperoxide reductase subunit F 1.8.1 0.666
4r38 RBFBlue-light-activated histidine kinase 2 2.7.13.3 0.664
5j4e FMNSensory box protein / 0.662
1djq FMNTrimethylamine dehydrogenase 1.5.8.2 0.660
3kve FADL-amino-acid oxidase / 0.660
1vcf FMNIsopentenyl-diphosphate delta-isomerase / 0.659
3ic9 FADPutative dihydrolipoamide dehydrogenase / 0.659
5ahk FADAcetolactate synthase II, large subunit / 0.659
2j09 FMNDeoxyribodipyrimidine photo-lyase 4.1.99.3 0.658
2dvl FADAcyl-CoA dehydrogenase / 0.657
1nec FMNOxygen-insensitive NAD(P)H nitroreductase 1 0.656
2mwg FMNBlue-light photoreceptor / 0.654
1f8s FADL-amino-acid oxidase 1.4.3.2 0.653
2gmh FADElectron transfer flavoprotein-ubiquinone oxidoreductase, mitochondrial 1.5.5.1 0.653
4uir FADOleate hydratase 4.2.1.53 0.653
3mpi FADGlutaryl-CoA dehydrogenase 1.3.99.32 0.652
4c2u ANPDNA helicase / 0.651
4x9m FADUncharacterized protein MG039 homolog / 0.651
5i39 FADL-amino acid deaminase / 0.651
1vji FMN12-oxophytodienoate reductase 1 1.3.1.42 0.650
3cnd FADPolyamine oxidase FMS1 / 0.650
3sm8 FNKFAD-dependent catabolic D-arginine dehydrogenase DauA / 0.650