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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4q4e BB2 Aminopeptidase N 3.4.11.2

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4q4e BB2Aminopeptidase N 3.4.11.2 0.979
4pkw GM6Lethal factor 3.4.24.83 0.724
2okl BB2Peptide deformylase 2 / 0.717
3m6p BB2Peptide deformylase 1B, chloroplastic/mitochondrial 3.5.1.88 0.714
3u04 BB2Peptide deformylase / 0.714
2dw0 GM6Zinc metalloproteinase-disintegrin-like VAP2B 3.4.24 0.712
2w13 WR2Snake venom metalloproteinase BaP1 3.4.24 0.694
2w14 WR2Snake venom metalloproteinase BaP1 3.4.24 0.693
2zxg S23Aminopeptidase N 3.4.11.2 0.683
1rm8 BATMatrix metalloproteinase-16 3.4.24 0.682
1mnc PLHNeutrophil collagenase 3.4.24.34 0.681
2jih 097A disintegrin and metalloproteinase with thrombospondin motifs 1 3.4.24 0.675
3hy7 097A disintegrin and metalloproteinase with thrombospondin motifs 5 3.4.24 0.675
1pwu GM6Lethal factor 3.4.24.83 0.674
3ebi BEYM1 family aminopeptidase 3.4.11 0.669
3kds NHXATP-dependent zinc metalloprotease FtsH / 0.663
1b3d S27Stromelysin-1 3.4.24.17 0.656
3aho 3A2Oligopeptidase / 0.655
4h57 0PJThermolysin 3.4.24.27 0.655
1ix1 BB2Peptide deformylase / 0.652
1jk3 BATMacrophage metalloelastase 3.4.24.65 0.651
2i47 INNDisintegrin and metalloproteinase domain-containing protein 17 3.4.24.86 0.651