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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4pzd NAD 3-Hydroxyacyl-CoA dehydrogenase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4pzd NAD3-Hydroxyacyl-CoA dehydrogenase / 1.003
2vyv NADGlyceraldehyde-3-phosphate dehydrogenase A / 0.714
1guy NADMalate dehydrogenase / 0.703
3wsw NADL-lactate dehydrogenase / 0.698
3cps NADGlyceraldehyde-3-phosphate dehydrogenase / 0.697
4lsm NADGlyceraldehyde-3-phosphate dehydrogenase / 0.688
3cin NADMyo-inositol-1-phosphate synthase-related protein / 0.686
1f17 NAIHydroxyacyl-coenzyme A dehydrogenase, mitochondrial 1.1.1.35 0.683
4j4b NAIUncharacterized protein / 0.683
4k28 NADShikimate dehydrogenase family protein / 0.682
2g5c NADPrephenate dehydrogenase / 0.678
3d4p NADL-lactate dehydrogenase 1 1.1.1.27 0.676
3hja NADGlyceraldehyde-3-phosphate dehydrogenase / 0.675
3had NADHydroxyacyl-coenzyme A dehydrogenase, mitochondrial 1.1.1.35 0.672
4k9d NADGlyceraldehyde-3-phosphate dehydrogenase 1.2.1.12 0.666
2g82 NADGlyceraldehyde-3-phosphate dehydrogenase / 0.665
2o4c NADErythronate-4-phosphate dehydrogenase / 0.664
3d64 NADAdenosylhomocysteinase / 0.663
4l4s NAIL-lactate dehydrogenase A chain 1.1.1.27 0.663
1hdg NADGlyceraldehyde-3-phosphate dehydrogenase / 0.662
2ep7 NADGlyceraldehyde-3-phosphate dehydrogenase / 0.662
4kug NAD3-hydroxybutyryl-CoA dehydrogenase / 0.661
4p8r NADGlyceraldehyde-3-phosphate dehydrogenase / 0.661
3cif NADGlyceraldehyde-3-phosphate dehydrogenase / 0.660
1f0y NADHydroxyacyl-coenzyme A dehydrogenase, mitochondrial 1.1.1.35 0.653
1x7d NADPutative ornithine cyclodeaminase / 0.651
2voj NADAlanine dehydrogenase 1.4.1.1 0.651
3zcx NADGlyceraldehyde-3-phosphate dehydrogenase / 0.651
4ros APRMalate dehydrogenase / 0.651