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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4py0 6AT P2Y purinoceptor 12

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4py0 6ATP2Y purinoceptor 12 / 1.280
4pxz CLRP2Y purinoceptor 12 / 0.917
1zcb GDPGuanine nucleotide-binding protein subunit alpha-13 / 0.677
3onw GDPGuanine nucleotide-binding protein G(i) subunit alpha-1 / 0.674
5a02 NAPGlucose-fructose oxidoreductase / 0.665
5a03 NDPGlucose-fructose oxidoreductase / 0.663
5a05 NDPGlucose-fructose oxidoreductase / 0.663
2vp4 DCPDeoxynucleoside kinase / 0.661
4rxp DTPDeoxynucleoside triphosphate triphosphohydrolase SAMHD1 3.1.5 0.660
2p9e NAID-3-phosphoglycerate dehydrogenase 1.1.1.95 0.659
3cx6 GDPGuanine nucleotide-binding protein subunit alpha-13 / 0.657
1got GDPGuanine nucleotide-binding protein G(t) subunit alpha-1 / 0.656
1wwk NAD307aa long hypothetical phosphoglycerate dehydrogenase / 0.656
3khu UPGUDP-glucose 6-dehydrogenase 1.1.1.22 0.656