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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4px9 ADP ATP-dependent RNA helicase DDX3X 3.6.4.13

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4px9 ADPATP-dependent RNA helicase DDX3X 3.6.4.13 0.965
3fmo ADPATP-dependent RNA helicase DDX19B 3.6.4.13 0.697
3ews ADPATP-dependent RNA helicase DDX19B 3.6.4.13 0.670
3ung ADPCRISPR system Cmr subunit Cmr2 / 0.665
3mfs ANPPeripheral plasma membrane protein CASK 2.7.11.1 0.657