scPDB - Distribution of Binding mode Similarity values of 4pb2 entry / Site 1

Distribution of Interaction pattern similarity measured by Grim

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Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65

Reference Protein Data Bank Entry :

PDB ID	HET	Uniprot Name	EC Number
4pb2	5UD	Nucleoside permease

Complex with similar interaction patterns:

PDB ID	HET	Uniprot Name	EC Number	Binding Mode Similarity
4pb2	5UD	Nucleoside permease	/	0.986
3tij	URI	Nucleoside permease	/	0.857
4pd6	URI	Nucleoside permease	/	0.856
4pda	CTN	Nucleoside permease	/	0.815
4pb1	RBV	Nucleoside permease	/	0.780
4pd5	GEO	Nucleoside permease	/	0.780
2b51	UTP	RNA editing complex protein MP57	/	0.677
4nv1	4TG	Formyl transferase	/	0.666
2vkd	UPG	Cytotoxin L	/	0.665
2xpk	Z0M	O-GlcNAcase NagJ	/	0.655
1g8o	U5P	N-acetyllactosaminide alpha-1,3-galactosyltransferase	/	0.653
4nv1	0FX	Formyl transferase	/	0.653