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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4p5f AR6 Inosine-uridine nucleoside N-ribohydrolase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4p5f AR6Inosine-uridine nucleoside N-ribohydrolase / 1.349
3epx IMQIAG-nucleoside hydrolase / 0.682
3dzj NMNADP-ribosyl cyclase/cyclic ADP-ribose hydrolase 1 3.2.2.6 0.663
1hp0 AD3IAG-nucleoside hydrolase / 0.660
1z0d GDPRas-related protein Rab-5C / 0.659
2pkm ADNAdenosine kinase 2.7.1.20 0.655
1php ADPPhosphoglycerate kinase 2.7.2.3 0.650
3sbd GNPRas-related C3 botulinum toxin substrate 1 / 0.650