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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4p5b FAD Flavin-dependent thymidylate synthase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4p5b FADFlavin-dependent thymidylate synthase / 1.209
4p5a FADFlavin-dependent thymidylate synthase / 0.929
5ios FADFlavin-dependent thymidylate synthase 2.1.1.148 0.874
3n0b FADFlavin-dependent thymidylate synthase 2.1.1.148 0.844
3g4a FADFlavin-dependent thymidylate synthase 2.1.1.148 0.817
4gte FADFlavin-dependent thymidylate synthase 2.1.1.148 0.805
2af6 FADFlavin-dependent thymidylate synthase 2.1.1.148 0.789
4gtl FADFlavin-dependent thymidylate synthase 2.1.1.148 0.785
1o29 FADFlavin-dependent thymidylate synthase 2.1.1.148 0.780
3n0c FADFlavin-dependent thymidylate synthase 2.1.1.148 0.777
1kq4 FADFlavin-dependent thymidylate synthase 2.1.1.148 0.677
3hzg FADFlavin-dependent thymidylate synthase 2.1.1.148 0.674
2wzm NA7Uncharacterized oxidoreductase MSMEG_2407/MSMEI_2346 / 0.670
1udb UFGUDP-glucose 4-epimerase 5.1.3.2 0.660
4kar FADFlavin-dependent thymidylate synthase 2.1.1.148 0.657
2gq2 NAPFlavin-dependent thymidylate synthase 2.1.1.148 0.653