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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4p2l FAD Sulfhydryl oxidase 1 1.8.3.2

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4p2l FADSulfhydryl oxidase 1 1.8.3.2 1.375
3t58 FADSulfhydryl oxidase 1 1.8.3.2 1.077
3t59 FADSulfhydryl oxidase 1 1.8.3.2 0.909
3lli FADSulfhydryl oxidase 1 1.8.3.2 0.906
3llk FADSulfhydryl oxidase 1 1.8.3.2 0.871
1jr8 FADFAD-linked sulfhydryl oxidase ERV2 1.8.3.2 0.831
3w4y FADMitochondrial FAD-linked sulfhydryl oxidase ERV1 1.8.3.2 0.757
3tk0 FADFAD-linked sulfhydryl oxidase ALR 1.8.3.2 0.751
3u2m FADFAD-linked sulfhydryl oxidase ALR 1.8.3.2 0.748
1jra FADFAD-linked sulfhydryl oxidase ERV2 1.8.3.2 0.744
3mbg FADFAD-linked sulfhydryl oxidase ALR 1.8.3.2 0.733
3u5s FADFAD-linked sulfhydryl oxidase ALR 1.8.3.2 0.729
3u2l FADFAD-linked sulfhydryl oxidase ALR 1.8.3.2 0.727
4e0i FADMitochondrial FAD-linked sulfhydryl oxidase ERV1 1.8.3.2 0.705
4ldk FADFAD-linked sulfhydryl oxidase ALR 1.8.3.2 0.704
4e0h FADMitochondrial FAD-linked sulfhydryl oxidase ERV1 1.8.3.2 0.702
1oqc FADFAD-linked sulfhydryl oxidase ALR 1.8.3.2 0.699
3gwn FADProbable FAD-linked sulfhydryl oxidase R596 1.8.3.2 0.690
3qzy FADFAD-linked sulfhydryl oxidase / 0.686
2c3c FAD2-oxopropyl-CoM reductase, carboxylating 1.8.1.5 0.673
5dbj FADFADH2-dependent halogenase PltA / 0.668
3gwl FADFAD-linked sulfhydryl oxidase 1.8.3.2 0.666
3ept FDAPutative FAD-monooxygenase / 0.664
2hj3 FADFAD-linked sulfhydryl oxidase ERV1 / 0.663
2wes FADTryptophan 5-halogenase / 0.663
3r7c FADFAD-linked sulfhydryl oxidase ALR 1.8.3.2 0.663
1ib0 FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.656
1n4u FAECholesterol oxidase 1.1.3.6 0.656
2c3d FAD2-oxopropyl-CoM reductase, carboxylating 1.8.1.5 0.655
2gew FADCholesterol oxidase 1.1.3.6 0.655
1rq1 FADEndoplasmic oxidoreductin-1 1.8.4 0.651