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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4oed DHT Androgen receptor

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4oed DHTAndrogen receptor / 1.229
4oey DHTAndrogen receptor / 1.086
2ama DHTAndrogen receptor / 1.074
2pit DHTAndrogen receptor / 1.074
2piv DHTAndrogen receptor / 1.069
1t76 DHTAndrogen receptor / 1.068
2z4j DHTAndrogen receptor / 1.067
1t7t DHTAndrogen receptor / 1.066
4oea DHTAndrogen receptor / 1.052
1t63 DHTAndrogen receptor / 1.045
4ofu DHTAndrogen receptor / 1.043
1t7f DHTAndrogen receptor / 1.041
2pir DHTAndrogen receptor / 1.039
1t7m DHTAndrogen receptor / 1.034
1t7r DHTAndrogen receptor / 1.030
2pio DHTAndrogen receptor / 1.030
1t5z DHTAndrogen receptor / 1.029
4oez DHTAndrogen receptor / 1.025
2piw DHTAndrogen receptor / 1.019
1t79 DHTAndrogen receptor / 1.015
1t73 DHTAndrogen receptor / 1.013
2piq DHTAndrogen receptor / 0.982
2pkl DHTAndrogen receptor / 0.982
2pix DHTAndrogen receptor / 0.979
2q7j TESAndrogen receptor / 0.974
2pip DHTAndrogen receptor / 0.960
1t74 DHTAndrogen receptor / 0.947
1t65 DHTAndrogen receptor / 0.938
4hlw TESAndrogen receptor / 0.935
2am9 TESAndrogen receptor / 0.924
2q7k TESAndrogen receptor / 0.923
2pnu ENMAndrogen receptor / 0.921
2q7l TESAndrogen receptor / 0.921
2ylq TESAndrogen receptor / 0.916
2ylp TESAndrogen receptor / 0.911
2q7i TESAndrogen receptor / 0.901
2ao6 R18Androgen receptor / 0.849
1xj7 DHTAndrogen receptor / 0.841
1e3g R18Androgen receptor / 0.817
1gs4 ZK5Androgen receptor / 0.800
1xow R18Androgen receptor / 0.787
1xq3 R18Androgen receptor / 0.780
4ofr DHTAndrogen receptor / 0.767
2amb 17HAndrogen receptor / 0.751
1i5r HYCEstradiol 17-beta-dehydrogenase 1 1.1.1.62 0.730
1lri CLRBeta-elicitin cryptogein / 0.713
1e3k R18Progesterone receptor / 0.710
2piu DHTAndrogen receptor / 0.705
4at2 ASDPossible succinate dehydrogenase / 0.703
1xu7 CPSCorticosteroid 11-beta-dehydrogenase isozyme 1 1.1.1.146 0.701
2abi 1CAMineralocorticoid receptor / 0.699
4k7a DHTAndrogen receptor / 0.694
2j7x ESTEstrogen receptor beta / 0.691
4e5l DBHPolymerase acidic protein / 0.691
1sr7 MOFProgesterone receptor / 0.689
1y5r C0RCorticosteroid 11-beta-dehydrogenase isozyme 1 1.1.1.146 0.685
1yb1 AOIEstradiol 17-beta-dehydrogenase 11 1.1.1.62 0.681
2aa7 1CAMineralocorticoid receptor / 0.681
2aax PDNMineralocorticoid receptor / 0.680
3g1r FIT3-oxo-5-beta-steroid 4-dehydrogenase / 0.680
3nhx ASDSteroid Delta-isomerase 5.3.3.1 0.679
1lhu ESTSex hormone-binding globulin / 0.674
2w8y NDRProgesterone receptor / 0.674
3w5q 3KLVitamin D3 receptor / 0.673
2rlc CHDCholoylglycine hydrolase 3.5.1.24 0.671
2yhd TESAndrogen receptor / 0.667
4q0a 4OAVitamin D3 receptor A / 0.667
2qpy DHTAndrogen receptor / 0.666
3cmf PDN3-oxo-5-beta-steroid 4-dehydrogenase / 0.664
2ocf ESTEstrogen receptor / 0.663
4ple CPSNuclear receptor subfamily 5 group A member 2 / 0.661
4apu A2KProgesterone receptor / 0.659
4jvl ESTEstrogen sulfotransferase 2.8.2.4 0.658
3iw1 ASDSteroid C26-monooxygenase 1.14.13.141 0.657
1o1v TCHGastrotropin / 0.656
1jtv TESEstradiol 17-beta-dehydrogenase 1 1.1.1.62 0.653
3w5r LOAVitamin D3 receptor / 0.652
2qgt EEDEstrogen receptor / 0.650