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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4odo FK5 Peptidyl-prolyl cis-trans isomerase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4odo FK5Peptidyl-prolyl cis-trans isomerase / 1.250
2fke FK5Peptidyl-prolyl cis-trans isomerase FKBP1A 5.2.1.8 0.899
1fkf FK5Peptidyl-prolyl cis-trans isomerase FKBP1A 5.2.1.8 0.847
4dz2 FK5Peptidyl-prolyl cis-trans isomerase / 0.845
1fkd 818Peptidyl-prolyl cis-trans isomerase FKBP1A 5.2.1.8 0.836
1a7x FKAPeptidyl-prolyl cis-trans isomerase FKBP1A 5.2.1.8 0.825
3ihz FK5Peptidylprolyl isomerase / 0.812
1q6i FK5FKBP-type peptidyl-prolyl cis-trans isomerase FkpA 5.2.1.8 0.810
1bkf FK5Peptidyl-prolyl cis-trans isomerase FKBP1A 5.2.1.8 0.805
1fkj FK5Peptidyl-prolyl cis-trans isomerase FKBP1A 5.2.1.8 0.796
2vn1 FK5Peptidylprolyl isomerase / 0.781
4qt3 RAPPeptidylprolyl isomerase / 0.777
4dh0 MR8Peptidyl-prolyl cis-trans isomerase FKBP1A 5.2.1.8 0.776
1tco FK5Peptidyl-prolyl cis-trans isomerase FKBP1A 5.2.1.8 0.764
1tco FK5Serine/threonine-protein phosphatase 2B catalytic subunit alpha isoform 3.1.3.16 0.764
1bl4 AP1Peptidyl-prolyl cis-trans isomerase FKBP1A 5.2.1.8 0.757
3o5r FK5Peptidyl-prolyl cis-trans isomerase FKBP5 5.2.1.8 0.754
4dri RAPSerine/threonine-protein kinase mTOR 2.7.11.1 0.751
4dri RAPPeptidyl-prolyl cis-trans isomerase FKBP5 5.2.1.8 0.751
1fkb RAPPeptidyl-prolyl cis-trans isomerase FKBP1A 5.2.1.8 0.749
1fkl RAPPeptidyl-prolyl cis-trans isomerase FKBP1A 5.2.1.8 0.741
1c9h RAPPeptidyl-prolyl cis-trans isomerase FKBP1B 5.2.1.8 0.738
2dg3 RAPPeptidyl-prolyl cis-trans isomerase FKBP1A 5.2.1.8 0.738
1qpf 858Peptidyl-prolyl cis-trans isomerase FKBP1A 5.2.1.8 0.734
4lay I63Peptidyl-prolyl cis-trans isomerase FKBP4 5.2.1.8 0.729
4drm 0MCPeptidyl-prolyl cis-trans isomerase FKBP5 5.2.1.8 0.725
4drn 0MCPeptidyl-prolyl cis-trans isomerase FKBP5 5.2.1.8 0.722
2dg9 RAPPeptidyl-prolyl cis-trans isomerase FKBP1A 5.2.1.8 0.714
4drk I63Peptidyl-prolyl cis-trans isomerase FKBP5 5.2.1.8 0.706
1nsg RADPeptidyl-prolyl cis-trans isomerase FKBP1A 5.2.1.8 0.703
1nsg RADSerine/threonine-protein kinase mTOR 2.7.11.1 0.703
2fap RADPeptidyl-prolyl cis-trans isomerase FKBP1A 5.2.1.8 0.703
2fap RADSerine/threonine-protein kinase mTOR 2.7.11.1 0.703
2dg4 RAPPeptidyl-prolyl cis-trans isomerase FKBP1A 5.2.1.8 0.702
4fap ARDPeptidyl-prolyl cis-trans isomerase FKBP1A 5.2.1.8 0.700
4fap ARDSerine/threonine-protein kinase mTOR 2.7.11.1 0.700
1fki SB1Peptidyl-prolyl cis-trans isomerase FKBP1A 5.2.1.8 0.699
1fkh SBXPeptidyl-prolyl cis-trans isomerase FKBP1A 5.2.1.8 0.692
4drj RAPSerine/threonine-protein kinase mTOR 2.7.11.1 0.687
4drj RAPPeptidyl-prolyl cis-trans isomerase FKBP4 5.2.1.8 0.687
4drp 0MDPeptidyl-prolyl cis-trans isomerase FKBP5 5.2.1.8 0.683
1fkg SB3Peptidyl-prolyl cis-trans isomerase FKBP1A 5.2.1.8 0.680
1j4h SUBPeptidyl-prolyl cis-trans isomerase FKBP1A 5.2.1.8 0.667