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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4o8j ADN RNA 3'-terminal phosphate cyclase 6.5.1.4

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4o8j ADNRNA 3'-terminal phosphate cyclase 6.5.1.4 0.919
3tw3 ATPRNA 3'-terminal phosphate cyclase 6.5.1.4 0.747
2pkm ADNAdenosine kinase 2.7.1.20 0.710
2pkk 2FAAdenosine kinase 2.7.1.20 0.698
4o4l GTPTubulin alpha-1B chain / 0.691
2i6a 5I5Adenosine kinase 2.7.1.20 0.685
3tut ATPRNA 3'-terminal phosphate cyclase 6.5.1.4 0.685
3lfz ADPUncharacterized protein MJ1225 / 0.684
2jas DTPDeoxyguanosine kinase / 0.671
4pne SAHMethyltransferase-like protein / 0.663
3uq9 TBNPutative adenosine kinase / 0.657
1nc1 MTH5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase 3.2.2.9 0.652
1qmg APXKetol-acid reductoisomerase, chloroplastic 1.1.1.86 0.650