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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4o6m C5P Uncharacterized protein

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4o6m C5PUncharacterized protein / 0.997
4o6n CDPUncharacterized protein / 0.907
3uwq U5POrotidine 5'-phosphate decarboxylase / 0.660
2ex1 C5PAlpha-2,3/2,6-sialyltransferase/sialidase / 0.657
1xdy MTEProtein-methionine-sulfoxide reductase catalytic subunit MsrP / 0.653
2iib C5PAlpha-2,3/2,6-sialyltransferase/sialidase / 0.653