Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4nwi CTN 7-methylguanosine phosphate-specific 5'-nucleotidase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4nwi CTN7-methylguanosine phosphate-specific 5'-nucleotidase / 0.827
3rl3 5GPMetallophosphoesterase MPPED2 3.1 0.664
2bsx NOSPurine nucleoside phosphorylase / 0.663
3t7v SAM3-methylornithine synthase / 0.661
2pkk 2FAAdenosine kinase 2.7.1.20 0.657
4ag5 ADPType IV secretory pathway VirB4 components-like protein / 0.652