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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4nv1 4TG Formyl transferase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4nv1 4TGFormyl transferase / 0.989
4nv1 0FXFormyl transferase / 0.839
4nv1 TYDFormyl transferase / 0.752
4pb2 5UDNucleoside permease / 0.666
4yfy 0FXVioF / 0.658
4xcz T3QQdtf / 0.655
5c4c UPGHisto-blood group ABO system transferase / 0.651
4avl TMPPolymerase acidic protein / 0.650