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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4nqg CZH Mitrocomin

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4nqg CZHMitrocomin / 1.163
4n1f CZHObelin / 0.933
1ej3 CZHAequorin-2 / 0.931
1uhj CZBAequorin-2 / 0.930
1jf2 CZHObelin / 0.909
1uhh CZPAequorin-2 / 0.879
1jf0 CZHObelin / 0.866
1el4 CTZObelin / 0.854
4mrx CZHObelin / 0.804
1qv1 CZHObelin / 0.780
1sl9 CZHObelin / 0.742
1qv0 CZHObelin / 0.728
1s36 CEIObelin / 0.717
4n1g CEIObelin / 0.706