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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4nmd FDA Bifunctional protein PutA

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4nmd FDABifunctional protein PutA / 1.519
4nm9 FADBifunctional protein PutA / 1.348
2fzm FADBifunctional protein PutA 1.5.5.2 1.257
4nmc FADBifunctional protein PutA / 1.252
4nmb FADBifunctional protein PutA / 1.248
2fzn FADBifunctional protein PutA 1.5.5.2 1.192
4q73 FADBifunctional protein PutA / 1.137
1tj1 FADBifunctional protein PutA 1.5.5.2 1.135
4q72 FADBifunctional protein PutA / 1.122
4q71 FADBifunctional protein PutA / 1.116
1tj2 FADBifunctional protein PutA 1.5.5.2 1.114
3haz FADBifunctional protein PutA / 1.079
1tj0 FADBifunctional protein PutA 1.5.5.2 1.064
3e2s FADBifunctional protein PutA 1.5.5.2 1.034
4h6r FDAProline dehydrogenase / 1.012
4o8a FADBifunctional protein PutA 1.2.1.88 0.976
2g37 FADProline dehydrogenase / 0.852
4h4u FADBiphenyl dioxygenase ferredoxin reductase subunit / 0.702
4hia FMNLOV protein / 0.696
5dbj FADFADH2-dependent halogenase PltA / 0.692
1cqx FADFlavohemoprotein / 0.683
4b5n FMNNAD(P)H:flavin oxidoreductase Sye4 / 0.672
1ib0 FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.671
2hsa FMN12-oxophytodienoate reductase 3 1.3.1.42 0.666
1z69 F425,10-methylenetetrahydromethanopterin reductase / 0.663
1ofe FMNFerredoxin-dependent glutamate synthase 2 1.4.7.1 0.661
4rek FADCholesterol oxidase 1.1.3.6 0.660
1nec FMNOxygen-insensitive NAD(P)H nitroreductase 1 0.659
3ad9 FADSubunit beta of sarcosine oxidase / 0.659
4ehy ADPTetraacyldisaccharide 4'-kinase / 0.657
4i6g FADCryptochrome-2 / 0.657
4hnb FMNLOV protein / 0.656
5ebu FMNLactate oxidase / 0.655
3t2z FADSulfide-quinone reductase / 0.654
5hy5 FADTryptophan 6-halogenase / 0.654
5a8a FMNRiboflavin biosynthesis protein RibF 2.7.1.26 0.652