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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4nmb FAD Bifunctional protein PutA

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4nmb FADBifunctional protein PutA / 1.609
4nm9 FADBifunctional protein PutA / 1.546
2fzn FADBifunctional protein PutA 1.5.5.2 1.468
1tj1 FADBifunctional protein PutA 1.5.5.2 1.361
1tj0 FADBifunctional protein PutA 1.5.5.2 1.357
4o8a FADBifunctional protein PutA 1.2.1.88 1.346
1tj2 FADBifunctional protein PutA 1.5.5.2 1.329
4q72 FADBifunctional protein PutA / 1.274
4nmd FDABifunctional protein PutA / 1.248
4q73 FADBifunctional protein PutA / 1.245
4nmc FADBifunctional protein PutA / 1.182
4q71 FADBifunctional protein PutA / 1.179
3e2s FADBifunctional protein PutA 1.5.5.2 1.168
2fzm FADBifunctional protein PutA 1.5.5.2 1.154
3haz FADBifunctional protein PutA / 1.151
4h6r FDAProline dehydrogenase / 0.890
2g37 FADProline dehydrogenase / 0.813
3gfy FMNUncharacterized protein / 0.708
4udr FAD5-(hydroxymethyl)furfural oxidase / 0.700
5ebu FMNLactate oxidase / 0.687
4hj4 FMNLOV protein / 0.675
4l82 FMNUncharacterized protein / 0.670
4udq FAD5-(hydroxymethyl)furfural oxidase / 0.670
4m5p FMNNADPH dehydrogenase / 0.666
4rje FNRLactate oxidase / 0.665
1gaq FADFerredoxin / 0.662
4wuj FMNGlycoside hydrolase family 15, cellulose signaling associated protein envoy / 0.660
1x0p FADTll0078 protein / 0.657
4qai FMNNADPH dehydrogenase / 0.657
4yxd FADSuccinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial / 0.656
4rek FADCholesterol oxidase 1.1.3.6 0.654
1n4u FAECholesterol oxidase 1.1.3.6 0.653
1r2j FADFkbI / 0.653
2gew FADCholesterol oxidase 1.1.3.6 0.653
1n1p FADCholesterol oxidase 1.1.3.6 0.652
2gqa FMNNADH:flavin oxidoreductase Sye1 / 0.652
3cox FADCholesterol oxidase 1.1.3.6 0.652
4u2t FADCholesterol oxidase 1.1.3.6 0.652
4xwr FADCholesterol oxidase 1.1.3.6 0.652
4utm FNRXenobiotic reductase / 0.650