Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4nm9 FAD Bifunctional protein PutA

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4nm9 FADBifunctional protein PutA / 1.597
4nmb FADBifunctional protein PutA / 1.546
2fzn FADBifunctional protein PutA 1.5.5.2 1.428
1tj2 FADBifunctional protein PutA 1.5.5.2 1.391
4o8a FADBifunctional protein PutA 1.2.1.88 1.383
4nmd FDABifunctional protein PutA / 1.348
1tj0 FADBifunctional protein PutA 1.5.5.2 1.342
1tj1 FADBifunctional protein PutA 1.5.5.2 1.338
4q72 FADBifunctional protein PutA / 1.297
4q73 FADBifunctional protein PutA / 1.258
3haz FADBifunctional protein PutA / 1.244
4q71 FADBifunctional protein PutA / 1.229
4nmc FADBifunctional protein PutA / 1.220
3e2s FADBifunctional protein PutA 1.5.5.2 1.148
2fzm FADBifunctional protein PutA 1.5.5.2 1.080
4h6r FDAProline dehydrogenase / 0.897
2g37 FADProline dehydrogenase / 0.849
5hxw FADL-amino acid deaminase / 0.706
3gfz FMNUncharacterized protein / 0.697
3mpi FADGlutaryl-CoA dehydrogenase 1.3.99.32 0.688
3gfy FMNUncharacterized protein / 0.680
4hj4 FMNLOV protein / 0.679
3tjl FMNNADPH dehydrogenase / 0.678
4x9m FADUncharacterized protein MG039 homolog / 0.676
4yl2 FMNLactate oxidase / 0.675
1j8q FMNFlavodoxin / 0.673
4udq FAD5-(hydroxymethyl)furfural oxidase / 0.672
1gaq FADFerredoxin / 0.670
3sfe FADSuccinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial / 0.667
4wuj FMNGlycoside hydrolase family 15, cellulose signaling associated protein envoy / 0.665
1h42 FADFerredoxin--NADP reductase 1.18.1.2 0.662
4m5p FMNNADPH dehydrogenase / 0.662
1v25 ANPLong-chain-fatty-acid--CoA ligase 6.2.1.3 0.660
2wet FADTryptophan 5-halogenase / 0.660
2bkj FMNNADPH-flavin oxidoreductase / 0.658
1vji FMN12-oxophytodienoate reductase 1 1.3.1.42 0.657
1ogj FADFerredoxin--NADP reductase 1.18.1.2 0.655
4df2 FMNNADPH dehydrogenase / 0.653
3tgp GNPGTPase HRas / 0.650