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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4nhy PD2 Prolyl 3-hydroxylase OGFOD1 1.14.11

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4nhy PD2Prolyl 3-hydroxylase OGFOD1 1.14.11 0.886
4ie0 PD2Alpha-ketoglutarate-dependent dioxygenase FTO / 0.663
4ie6 UN9Alpha-ketoglutarate-dependent dioxygenase FTO / 0.658
4ie5 MD6Alpha-ketoglutarate-dependent dioxygenase FTO / 0.657
4nhm UN9Prolyl 3,4-dihydroxylase TPA1 1.14.11 0.657
4nhk PD2Prolyl 3,4-dihydroxylase TPA1 1.14.11 0.652