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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4na4 A1R Poly(ADP-ribose) glycohydrolase 3.2.1.143

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4na4 A1RPoly(ADP-ribose) glycohydrolase 3.2.1.143 1.222
4b1j A1RPoly(ADP-ribose) glycohydrolase 3.2.1.143 1.175
4b1h AR6Poly(ADP-ribose) glycohydrolase 3.2.1.143 1.157
4b1i A8PPoly(ADP-ribose) glycohydrolase 3.2.1.143 1.137
3uel A1RPoly(ADP-ribose) glycohydrolase 3.2.1.143 0.943
3sig AR6Uncharacterized protein / 0.865
3sii A1RUncharacterized protein / 0.841
5cb3 APRO-acetyl-ADP-ribose deacetylase / 0.698
4j5r A1RO-acetyl-ADP-ribose deacetylase 1 3.5.1 0.685
1a9x ADPCarbamoyl-phosphate synthase large chain / 0.652
5fsx ADPUncharacterized protein / 0.652
4j1t NAPNAD(P) transhydrogenase subunit beta / 0.650