Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4ms1 381 Gamma-aminobutyric acid type B receptor subunit 1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4ms1 381Gamma-aminobutyric acid type B receptor subunit 1 / 0.922
4mr9 2BXGamma-aminobutyric acid type B receptor subunit 1 / 0.800
4mr7 2BVGamma-aminobutyric acid type B receptor subunit 1 / 0.777
4mrm 2BYGamma-aminobutyric acid type B receptor subunit 1 / 0.710