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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4mrt COA 4'-phosphopantetheinyl transferase sfp 2.7.8

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4mrt COA4'-phosphopantetheinyl transferase sfp 2.7.8 1.349
1qr0 COA4'-phosphopantetheinyl transferase sfp 2.7.8 0.752
2cg5 COAL-aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase 2.7.8 0.728
1zw5 ZOLFarnesyl pyrophosphate synthase 2.5.1.10 0.704
3ez3 ZOLFarnesyl pyrophosphate synthase, putative / 0.702
3ldw ZOLFarnesyl pyrophosphate synthase, putative / 0.688
4dwb 0M7Farnesyl pyrophosphate synthase / 0.682
3ump ATPATP-dependent 6-phosphofructokinase isozyme 2 2.7.1.11 0.680
2c43 COAL-aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase 2.7.8 0.678
2v9x DUTdCTP deaminase / 0.653
2z4z SC0Geranylgeranyl pyrophosphate synthase / 0.653
4nke RISFarnesyl pyrophosphate synthase 2.5.1.10 0.651