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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4mkb 28V Genome polyprotein 2.7.7.48

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4mkb 28VGenome polyprotein 2.7.7.48 1.093
4mka 2AYGenome polyprotein 2.7.7.48 0.985
4mk8 28QGenome polyprotein 2.7.7.48 0.883
4mk9 28RGenome polyprotein 2.7.7.48 0.844
3cde N3HGenome polyprotein 2.7.7.48 0.752
4mk7 28OGenome polyprotein 2.7.7.48 0.735
3h2l YAKGenome polyprotein 2.7.7.48 0.705
3upi 0C2Genome polyprotein 2.7.7.48 0.691
3co9 3MSGenome polyprotein 2.7.7.48 0.689
4eaw 0NQGenome polyprotein 2.7.7.48 0.670
3ske 054Genome polyprotein 2.7.7.48 0.669
3h98 B5PGenome polyprotein 2.7.7.48 0.665
3tyv HI3Genome polyprotein 2.7.7.48 0.664
4ih6 1EPGenome polyprotein 2.7.7.48 0.662
3cvk N34Genome polyprotein 2.7.7.48 0.659
3u4o 08EGenome polyprotein 2.7.7.48 0.659