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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4mk9 28R Genome polyprotein 2.7.7.48

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4mk9 28RGenome polyprotein 2.7.7.48 1.044
4mka 2AYGenome polyprotein 2.7.7.48 0.890
4mkb 28VGenome polyprotein 2.7.7.48 0.844
4ih7 1ERGenome polyprotein 2.7.7.48 0.755
4mk8 28QGenome polyprotein 2.7.7.48 0.734
3tyv HI3Genome polyprotein 2.7.7.48 0.700
3uph 0C1Genome polyprotein 2.7.7.48 0.700
3upi 0C2Genome polyprotein 2.7.7.48 0.669
3ske 054Genome polyprotein 2.7.7.48 0.658
4ih6 1EPGenome polyprotein 2.7.7.48 0.651