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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4mk8 28Q Genome polyprotein 2.7.7.48

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4mk8 28QGenome polyprotein 2.7.7.48 1.047
4mkb 28VGenome polyprotein 2.7.7.48 0.878
4mka 2AYGenome polyprotein 2.7.7.48 0.758
3u4r 08FGenome polyprotein 2.7.7.48 0.736
4mk7 28OGenome polyprotein 2.7.7.48 0.734
4mk9 28RGenome polyprotein 2.7.7.48 0.734
3igv B80Genome polyprotein 2.7.7.48 0.731
3upi 0C2Genome polyprotein 2.7.7.48 0.722
4eaw 0NQGenome polyprotein 2.7.7.48 0.714
4ih7 1ERGenome polyprotein 2.7.7.48 0.701
3uph 0C1Genome polyprotein 2.7.7.48 0.699
3co9 3MSGenome polyprotein 2.7.7.48 0.696
3cvk N34Genome polyprotein 2.7.7.48 0.681
3cwj 321Genome polyprotein 2.7.7.48 0.667
3h2l YAKGenome polyprotein 2.7.7.48 0.664
3h59 H59Genome polyprotein 2.7.7.48 0.658
3gyn B42Genome polyprotein 2.7.7.48 0.656
3cde N3HGenome polyprotein 2.7.7.48 0.655