sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
Binding Modes are compared using Grim.
For more information, please see the following publication:
Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 4mgk | CMP | Rap guanine nucleotide exchange factor 4 |
| PDB ID | HET | Uniprot Name | EC Number | Binding Mode Similarity |
Align |
|---|---|---|---|---|---|
| 4mgk | CMP | Rap guanine nucleotide exchange factor 4 | / | 0.947 | |
| 1cx4 | CMP | cAMP-dependent protein kinase type II-beta regulatory subunit | / | 0.758 | |
| 1vp6 | CMP | Cyclic nucleotide-gated potassium channel mll3241 | / | 0.755 | |
| 1rgs | CMP | cAMP-dependent protein kinase type I-alpha regulatory subunit | / | 0.754 | |
| 4hbn | CMP | Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 4 | / | 0.750 | |
| 2ptm | CMP | Hyperpolarization-activated (Ih) channel | / | 0.747 | |
| 3cl1 | PCG | Cyclic nucleotide-gated potassium channel mll3241 | / | 0.743 | |
| 4z07 | PCG | cGMP-dependent protein kinase 1 | 2.7.11.12 | 0.740 | |
| 4i0a | CMP | cAMP-activated global transcriptional regulator CRP | / | 0.738 | |
| 4qx5 | CMP | cGMP-dependent protein kinase 1 | 2.7.11.12 | 0.738 | |
| 1ne6 | SP1 | cAMP-dependent protein kinase type I-alpha regulatory subunit | / | 0.735 | |
| 1q43 | CMP | Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2 | / | 0.730 | |
| 3of1 | CMP | cAMP-dependent protein kinase regulatory subunit | / | 0.729 | |
| 3u10 | CMP | Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2 | / | 0.729 | |
| 1ne4 | RP1 | cAMP-dependent protein kinase type I-alpha regulatory subunit | / | 0.728 | |
| 1q3e | PCG | Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2 | / | 0.728 | |
| 3bpz | CMP | Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2 | / | 0.726 | |
| 4i01 | CMP | cAMP-activated global transcriptional regulator CRP | / | 0.726 | |
| 4i0b | CMP | cAMP-activated global transcriptional regulator CRP | / | 0.726 | |
| 1hw5 | CMP | cAMP-activated global transcriptional regulator CRP | / | 0.723 | |
| 3ryp | CMP | cAMP-activated global transcriptional regulator CRP | / | 0.722 | |
| 4hzf | CMP | cAMP-activated global transcriptional regulator CRP | / | 0.721 | |
| 4mgi | CMP | Rap guanine nucleotide exchange factor 4 | / | 0.720 | |
| 5c6c | CMP | cGMP-dependent protein kinase 2 | 2.7.11.12 | 0.715 | |
| 3r6s | CMP | CRP-like cAMP-activated global transcriptional regulator | / | 0.713 | |
| 4ku7 | PCG | cGMP-dependent protein kinase 1 | 2.7.11.12 | 0.712 | |
| 3u11 | CMP | Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 4 | / | 0.710 | |
| 4i02 | CMP | cAMP-activated global transcriptional regulator CRP | / | 0.709 | |
| 5c8w | PCG | cGMP-dependent protein kinase 2 | 2.7.11.12 | 0.709 | |
| 1g6n | CMP | cAMP-activated global transcriptional regulator CRP | / | 0.708 | |
| 1i5z | CMP | cAMP-activated global transcriptional regulator CRP | / | 0.708 | |
| 3qop | CMP | cAMP-activated global transcriptional regulator CRP | / | 0.708 | |
| 3u0z | CMP | Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 1 | / | 0.707 | |
| 4i09 | CMP | cAMP-activated global transcriptional regulator CRP | / | 0.707 | |
| 4n9i | PCG | Catabolite expression activator | / | 0.707 | |
| 3rou | CMP | cAMP-activated global transcriptional regulator CRP | / | 0.705 | |
| 3ryr | CMP | cAMP-activated global transcriptional regulator CRP | / | 0.705 | |
| 2cgp | CMP | cAMP-activated global transcriptional regulator CRP | / | 0.702 | |
| 3rdi | CMP | cAMP-activated global transcriptional regulator CRP | / | 0.701 | |
| 3kcc | CMP | cAMP-activated global transcriptional regulator CRP | / | 0.700 | |
| 1q5o | CMP | Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2 | / | 0.699 | |
| 4ft8 | CMP | cAMP-activated global transcriptional regulator CRP | / | 0.698 | |
| 1i6x | CMP | cAMP-activated global transcriptional regulator CRP | / | 0.696 | |
| 3od0 | PCG | cGMP-dependent protein kinase 1 | 2.7.11.12 | 0.696 | |
| 4jv4 | 1OR | cAMP-dependent protein kinase type I-alpha regulatory subunit | / | 0.696 | |
| 3otf | CMP | Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 4 | / | 0.695 | |
| 2k0g | CMP | Cyclic nucleotide-gated potassium channel mll3241 | / | 0.693 | |
| 3n4m | CMP | cAMP-activated global transcriptional regulator CRP | / | 0.691 | |
| 1cgp | CMP | cAMP-activated global transcriptional regulator CRP | / | 0.689 | |
| 3rpq | CMP | cAMP-activated global transcriptional regulator CRP | / | 0.687 | |
| 1rl3 | PCG | cAMP-dependent protein kinase type I-alpha regulatory subunit | / | 0.686 | |
| 3i59 | N6S | CRP-like cAMP-activated global transcriptional regulator | / | 0.682 | |
| 4ev0 | CMP | Cyclic AMP receptor protein | / | 0.681 | |
| 3ocp | CMP | cGMP-dependent protein kinase 1 | 2.7.11.12 | 0.680 | |
| 3shr | CMP | cGMP-dependent protein kinase 1 | 2.7.11.12 | 0.680 | |
| 1zrc | CMP | cAMP-activated global transcriptional regulator CRP | / | 0.677 | |
| 3ogj | CMP | cGMP-dependent protein kinase 1 | 2.7.11.12 | 0.667 | |
| 4r8h | SP1 | cAMP-activated global transcriptional regulator CRP | / | 0.664 | |
| 4jva | 1OR | cAMP-dependent protein kinase type II-beta regulatory subunit | / | 0.663 | |
| 1n08 | ADP | Riboflavin kinase | 2.7.1.26 | 0.660 | |
| 1zrd | CMP | cAMP-activated global transcriptional regulator CRP | / | 0.650 |