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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4ma5 ANP N5-carboxyaminoimidazole ribonucleotide synthase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4ma5 ANPN5-carboxyaminoimidazole ribonucleotide synthase / 0.936
3i12 ADPD-alanine--D-alanine ligase A 6.3.2.4 0.681
5c1p ADPD-alanine--D-alanine ligase / 0.664
3t9f ADPInositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 2 / 0.662
4c5b ADPD-alanine--D-alanine ligase B 6.3.2.4 0.658
3t99 ADPInositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 2 / 0.650
4mv3 ACPBiotin carboxylase 6.3.4.14 0.650