Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4m8e 29V Retinoic acid receptor RXR-alpha

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4m8e 29VRetinoic acid receptor RXR-alpha / 1.176
4m8h R4MRetinoic acid receptor RXR-alpha / 1.026
4k4j 1O8Retinoic acid receptor RXR-alpha / 0.826
1fm9 9CRRetinoic acid receptor RXR-alpha / 0.774
1xls REARetinoic acid receptor RXR-alpha / 0.762
3uvv REARetinoic acid receptor RXR-alpha / 0.711
1fm6 9CRRetinoic acid receptor RXR-alpha / 0.709
1xiu REARetinoic acid receptor RXR / 0.691
2acl REARetinoic acid receptor RXR-alpha / 0.672
3fal REARetinoic acid receptor RXR-alpha / 0.672
1fby REARetinoic acid receptor RXR-alpha / 0.662
2j7x ESTEstrogen receptor beta / 0.658
1drt PCVClavaminate synthase 1 1.14.11.21 0.655
1cgk NARChalcone synthase 2 2.3.1.74 0.651
1k74 9CRRetinoic acid receptor RXR-alpha / 0.651
3wix LC3Induced myeloid leukemia cell differentiation protein Mcl-1 / 0.651