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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4m2v BZ1 Carbonic anhydrase 2 4.2.1.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4m2v BZ1Carbonic anhydrase 2 4.2.1.1 0.936
1a42 BZUCarbonic anhydrase 2 4.2.1.1 0.824
1cil ETSCarbonic anhydrase 2 4.2.1.1 0.803
1bnt AL2Carbonic anhydrase 2 4.2.1.1 0.786
4m2r BZ1Carbonic anhydrase 2 4.2.1.1 0.778
4k13 ETSCarbonic anhydrase 2 4.2.1.1 0.769
1bnu AL3Carbonic anhydrase 2 4.2.1.1 0.764
1bnv AL7Carbonic anhydrase 2 4.2.1.1 0.755
1bnq AL4Carbonic anhydrase 2 4.2.1.1 0.751
3dbu D8WCarbonic anhydrase 2 4.2.1.1 0.739
1bnm AL8Carbonic anhydrase 2 4.2.1.1 0.735
3d8w D8WCarbonic anhydrase 2 4.2.1.1 0.735
3k2f NKXCarbonic anhydrase 2 4.2.1.1 0.734
1bnw TPDCarbonic anhydrase 2 4.2.1.1 0.730
3fw3 ETSCarbonic anhydrase 4 4.2.1.1 0.727
3znc BZ1Carbonic anhydrase 4 4.2.1.1 0.726
4uov AZMCarbonate dehydratase / 0.726
4bf6 X0QCarbonic anhydrase 2 4.2.1.1 0.725
3f7u AG4Carbonic anhydrase 4 4.2.1.1 0.714
1g52 F2BCarbonic anhydrase 2 4.2.1.1 0.710
3n2p AYXCarbonic anhydrase 2 4.2.1.1 0.710
1g45 FSBCarbonic anhydrase 2 4.2.1.1 0.708
1g4o BSBCarbonic anhydrase 2 4.2.1.1 0.708
1bnn AL1Carbonic anhydrase 2 4.2.1.1 0.705
3mzc S6ICarbonic anhydrase 2 4.2.1.1 0.705
4lu3 AZMCarbonic anhydrase 14 4.2.1.1 0.704
1g4j FFBCarbonic anhydrase 2 4.2.1.1 0.703
3dc3 AZMCarbonic anhydrase 2 4.2.1.1 0.703
3dd0 EZLCarbonic anhydrase 2 4.2.1.1 0.703
3v2j AZMCarbonic anhydrase 2 4.2.1.1 0.703
4iwz 1GOCarbonic anhydrase 2 4.2.1.1 0.703
4k0z MZMCarbonic anhydrase 2 4.2.1.1 0.703
1i90 INMCarbonic anhydrase 2 4.2.1.1 0.702
3oyq OYQCarbonic anhydrase 2 4.2.1.1 0.701
4x5s AZMCarbonic anhydrase (Carbonate dehydratase) / 0.701
1i91 INQCarbonic anhydrase 2 4.2.1.1 0.700
3m40 J45Carbonic anhydrase 2 4.2.1.1 0.699
1if4 FBSCarbonic anhydrase 2 4.2.1.1 0.698
1jd0 AZMCarbonic anhydrase 12 4.2.1.1 0.698
3dcs MZMCarbonic anhydrase 2 4.2.1.1 0.698
4xiw AZMCarbonic anhydrase, alpha type / 0.698
1i9q IOFCarbonic anhydrase 2 4.2.1.1 0.697
3dcw EZLCarbonic anhydrase 2 4.2.1.1 0.696
3mho J43Carbonic anhydrase 2 4.2.1.1 0.696
3dcc D9ZCarbonic anhydrase 2 4.2.1.1 0.695
1i8z INLCarbonic anhydrase 2 4.2.1.1 0.694
1zsb AZMCarbonic anhydrase 2 4.2.1.1 0.694
3d9z D9ZCarbonic anhydrase 2 4.2.1.1 0.694
3sbh E65Carbonic anhydrase 2 4.2.1.1 0.694
3f7b AG5Carbonic anhydrase 4 4.2.1.1 0.693
3mhl J71Carbonic anhydrase 2 4.2.1.1 0.693
4k0t D9ZCarbonic anhydrase 2 4.2.1.1 0.693
3n3j WWVCarbonic anhydrase 2 4.2.1.1 0.691
3oy0 OY0Carbonic anhydrase 2 4.2.1.1 0.689
1bn1 AL5Carbonic anhydrase 2 4.2.1.1 0.688
2h4n AZMCarbonic anhydrase 2 4.2.1.1 0.688
3n4b WWZCarbonic anhydrase 2 4.2.1.1 0.688
3s8x E59Carbonic anhydrase 2 4.2.1.1 0.688
1kwq SG1Carbonic anhydrase 2 4.2.1.1 0.686
1xpz 4TZCarbonic anhydrase 2 4.2.1.1 0.686
3m2n J74Carbonic anhydrase 2 4.2.1.1 0.686
4ilx 1EZCarbonic anhydrase 2 4.2.1.1 0.686
1bn3 AL6Carbonic anhydrase 2 4.2.1.1 0.685
1bn4 AL9Carbonic anhydrase 2 4.2.1.1 0.685
2weg FBVCarbonic anhydrase 2 4.2.1.1 0.684
3kig DA4Carbonic anhydrase 2 4.2.1.1 0.684
3mna DWHCarbonic anhydrase 2 4.2.1.1 0.683
3m67 E36Carbonic anhydrase 2 4.2.1.1 0.682
1bzm MZMCarbonic anhydrase 1 4.2.1.1 0.680
3s9t E49Carbonic anhydrase 2 4.2.1.1 0.680
3mhc ARZCarbonic anhydrase 2 4.2.1.1 0.679
1oq5 CELCarbonic anhydrase 2 4.2.1.1 0.678
3dd8 2C7Carbonic anhydrase 2 4.2.1.1 0.678
1rj6 AZMCarbonic anhydrase 14 4.2.1.1 0.677
3sax E50Carbonic anhydrase 2 4.2.1.1 0.676
4kap 1QVCarbonic anhydrase 2 4.2.1.1 0.674
1g54 FFBCarbonic anhydrase 2 4.2.1.1 0.672
1okn STBCarbonic anhydrase 2 4.2.1.1 0.672
4bf1 9FKCarbonic anhydrase 2 4.2.1.1 0.670
3m96 E38Carbonic anhydrase 2 4.2.1.1 0.669
2nmx M25Carbonic anhydrase 1 4.2.1.1 0.668
5fl4 9FKCarbonic anhydrase 9 4.2.1.1 0.668
3mhi J90Carbonic anhydrase 2 4.2.1.1 0.667
3n0n P9BCarbonic anhydrase 2 4.2.1.1 0.666
2nn7 M29Carbonic anhydrase 1 4.2.1.1 0.665
3m98 E02Carbonic anhydrase 2 4.2.1.1 0.665
3ni5 C1HCarbonic anhydrase 2 4.2.1.1 0.665
1okm SABCarbonic anhydrase 2 4.2.1.1 0.663
3ffp LC1Carbonic anhydrase 2 4.2.1.1 0.663
3m2y BE0Carbonic anhydrase 2 4.2.1.1 0.663
1i9p IOECarbonic anhydrase 2 4.2.1.1 0.662
3daz MZMCarbonic anhydrase 2 4.2.1.1 0.660
4hu1 V13Carbonic anhydrase 13 4.2.1.1 0.660
2weo FBWCarbonic anhydrase 2 4.2.1.1 0.659
1cnx EG2Carbonic anhydrase 2 4.2.1.1 0.656
3f4x KLTCarbonic anhydrase 2 4.2.1.1 0.656
2weh FB1Carbonic anhydrase 2 4.2.1.1 0.655
1eou SMSCarbonic anhydrase 2 4.2.1.1 0.653
1if5 FBTCarbonic anhydrase 2 4.2.1.1 0.650
1if7 SBRCarbonic anhydrase 2 4.2.1.1 0.650