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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4lxb 7R9 Prothrombin 3.4.21.5

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4lxb 7R9Prothrombin 3.4.21.5 1.017
4bti 7R9Coagulation factor X 3.4.21.6 0.758
4btu 6XSCoagulation factor X 3.4.21.6 0.756
4loy 6XSProthrombin 3.4.21.5 0.754
2vwm LZICoagulation factor X 3.4.21.6 0.698
4e7r 0NWProthrombin 3.4.21.5 0.679
1sl3 170Prothrombin 3.4.21.5 0.660
2p3u 663Coagulation factor X 3.4.21.6 0.658
2jh6 894Prothrombin 3.4.21.5 0.656