Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4loy 6XS Prothrombin 3.4.21.5

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4loy 6XSProthrombin 3.4.21.5 0.981
4lxb 7R9Prothrombin 3.4.21.5 0.754
4btu 6XSCoagulation factor X 3.4.21.6 0.740
1sl3 170Prothrombin 3.4.21.5 0.692
1z71 L17Prothrombin 3.4.21.5 0.672
4e7r 0NWProthrombin 3.4.21.5 0.670
1zgv 501Prothrombin 3.4.21.5 0.669
1mq6 XLDCoagulation factor X 3.4.21.6 0.662
1ta6 177Prothrombin 3.4.21.5 0.661
1nt1 T76Prothrombin 3.4.21.5 0.657
2vwm LZICoagulation factor X 3.4.21.6 0.656
2p3u 663Coagulation factor X 3.4.21.6 0.655