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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4ldk FAD FAD-linked sulfhydryl oxidase ALR 1.8.3.2

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4ldk FADFAD-linked sulfhydryl oxidase ALR 1.8.3.2 1.409
3u2l FADFAD-linked sulfhydryl oxidase ALR 1.8.3.2 1.279
3u5s FADFAD-linked sulfhydryl oxidase ALR 1.8.3.2 1.262
3tk0 FADFAD-linked sulfhydryl oxidase ALR 1.8.3.2 1.239
3mbg FADFAD-linked sulfhydryl oxidase ALR 1.8.3.2 1.207
3u2m FADFAD-linked sulfhydryl oxidase ALR 1.8.3.2 1.180
3r7c FADFAD-linked sulfhydryl oxidase ALR 1.8.3.2 1.075
4e0h FADMitochondrial FAD-linked sulfhydryl oxidase ERV1 1.8.3.2 1.061
3w4y FADMitochondrial FAD-linked sulfhydryl oxidase ERV1 1.8.3.2 1.027
1oqc FADFAD-linked sulfhydryl oxidase ALR 1.8.3.2 1.022
1jr8 FADFAD-linked sulfhydryl oxidase ERV2 1.8.3.2 0.981
1jra FADFAD-linked sulfhydryl oxidase ERV2 1.8.3.2 0.961
2hj3 FADFAD-linked sulfhydryl oxidase ERV1 / 0.936
4e0i FADMitochondrial FAD-linked sulfhydryl oxidase ERV1 1.8.3.2 0.910
3lli FADSulfhydryl oxidase 1 1.8.3.2 0.867
3llk FADSulfhydryl oxidase 1 1.8.3.2 0.849
3t59 FADSulfhydryl oxidase 1 1.8.3.2 0.814
3t58 FADSulfhydryl oxidase 1 1.8.3.2 0.785
3td7 FADProbable FAD-linked sulfhydryl oxidase R596 1.8.3.2 0.779
3gwn FADProbable FAD-linked sulfhydryl oxidase R596 1.8.3.2 0.768
3gwl FADFAD-linked sulfhydryl oxidase 1.8.3.2 0.727
4p2l FADSulfhydryl oxidase 1 1.8.3.2 0.704
3ust FADAcMNPV orf92 / 0.701
4opl FDAConserved Archaeal protein / 0.669
4hj6 FMNLOV protein / 0.665
1krh FADBenzoate 1,2-dioxygenase electron transfer component 1.18.1.3 0.661
1os1 ATPPhosphoenolpyruvate carboxykinase (ATP) / 0.653
3qzy FADFAD-linked sulfhydryl oxidase / 0.652
4c3x FAD3-ketosteroid dehydrogenase / 0.650