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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4lay I63 Peptidyl-prolyl cis-trans isomerase FKBP4 5.2.1.8

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4lay I63Peptidyl-prolyl cis-trans isomerase FKBP4 5.2.1.8 1.055
4drk I63Peptidyl-prolyl cis-trans isomerase FKBP5 5.2.1.8 0.898
4dro 0MDPeptidyl-prolyl cis-trans isomerase FKBP5 5.2.1.8 0.884
4drn 0MCPeptidyl-prolyl cis-trans isomerase FKBP5 5.2.1.8 0.866
4drm 0MCPeptidyl-prolyl cis-trans isomerase FKBP5 5.2.1.8 0.862
4drp 0MDPeptidyl-prolyl cis-trans isomerase FKBP5 5.2.1.8 0.850
4dh0 MR8Peptidyl-prolyl cis-trans isomerase FKBP1A 5.2.1.8 0.838
1bl4 AP1Peptidyl-prolyl cis-trans isomerase FKBP1A 5.2.1.8 0.823
1fkg SB3Peptidyl-prolyl cis-trans isomerase FKBP1A 5.2.1.8 0.813
4dz2 FK5Peptidyl-prolyl cis-trans isomerase / 0.806
1fkd 818Peptidyl-prolyl cis-trans isomerase FKBP1A 5.2.1.8 0.770
1fkh SBXPeptidyl-prolyl cis-trans isomerase FKBP1A 5.2.1.8 0.740
2dg9 RAPPeptidyl-prolyl cis-trans isomerase FKBP1A 5.2.1.8 0.738
1c9h RAPPeptidyl-prolyl cis-trans isomerase FKBP1B 5.2.1.8 0.729
4odo FK5Peptidyl-prolyl cis-trans isomerase / 0.729
1q6i FK5FKBP-type peptidyl-prolyl cis-trans isomerase FkpA 5.2.1.8 0.727
1qpl 587Peptidyl-prolyl cis-trans isomerase FKBP1A 5.2.1.8 0.726
1fkf FK5Peptidyl-prolyl cis-trans isomerase FKBP1A 5.2.1.8 0.716
1j4h SUBPeptidyl-prolyl cis-trans isomerase FKBP1A 5.2.1.8 0.696
1fki SB1Peptidyl-prolyl cis-trans isomerase FKBP1A 5.2.1.8 0.695
1a7x FKAPeptidyl-prolyl cis-trans isomerase FKBP1A 5.2.1.8 0.687
1fkl RAPPeptidyl-prolyl cis-trans isomerase FKBP1A 5.2.1.8 0.685
1fkj FK5Peptidyl-prolyl cis-trans isomerase FKBP1A 5.2.1.8 0.684
2fke FK5Peptidyl-prolyl cis-trans isomerase FKBP1A 5.2.1.8 0.665
1qpf 858Peptidyl-prolyl cis-trans isomerase FKBP1A 5.2.1.8 0.658
1tco FK5Peptidyl-prolyl cis-trans isomerase FKBP1A 5.2.1.8 0.656
1tco FK5Serine/threonine-protein phosphatase 2B catalytic subunit alpha isoform 3.1.3.16 0.656
1bkf FK5Peptidyl-prolyl cis-trans isomerase FKBP1A 5.2.1.8 0.653
3o5r FK5Peptidyl-prolyl cis-trans isomerase FKBP5 5.2.1.8 0.653