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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4l9k EHF Serum albumin

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4l9k EHFSerum albumin / 0.844
5ccc DDFDihydrofolate reductase 1.5.1.3 0.666
1x1a SAMC-20 methyltransferase / 0.658
3csc ACOCitrate synthase, mitochondrial 2.3.3.1 0.657
4ij1 17CAnthranilate phosphoribosyltransferase / 0.655
4isu IKMGlutamate receptor 2 / 0.655
1n38 U3HRNA-directed RNA polymerase lambda-3 2.7.7.48 0.651
3fbc TYDNucleoside diphosphate kinase 2.7.4.6 0.650