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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4l8u 9AZ Serum albumin

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4l8u 9AZSerum albumin / 0.898
1rx8 FOLDihydrofolate reductase 1.5.1.3 0.670
1hfq MOTDihydrofolate reductase 1.5.1.3 0.668
1qmf KEFPenicillin-binding protein 2x / 0.668
4x5h FOLDihydrofolate reductase 1.5.1.3 0.656
2d0k FOLDihydrofolate reductase 1.5.1.3 0.654
1ra8 FOLDihydrofolate reductase 1.5.1.3 0.653
1u4s BIHL-lactate dehydrogenase 1.1.1.27 0.653
4bqy FNTEgl nine homolog 1 / 0.653
2bjs ACVIsopenicillin N synthase 1.21.3.1 0.651
4x5i FOLDihydrofolate reductase 1.5.1.3 0.651
1n0s FLUBilin-binding protein / 0.650
3lnc 5GPGuanylate kinase / 0.650