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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4l7h 1W1 Beta-secretase 1 3.4.23.46

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4l7h 1W1Beta-secretase 1 3.4.23.46 0.893
4l7j 1W2Beta-secretase 1 3.4.23.46 0.697
4j1k 1HGBeta-secretase 1 3.4.23.46 0.690
4lc7 1WPBeta-secretase 1 3.4.23.46 0.669
4j1i 1HHBeta-secretase 1 3.4.23.46 0.664
4j0z 1H5Beta-secretase 1 3.4.23.46 0.659
3zmg 6Z0Beta-secretase 1 3.4.23.46 0.656
4b1c 1B1Beta-secretase 1 3.4.23.46 0.653
4bfd 8T3Beta-secretase 1 3.4.23.46 0.651