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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4l7f 1V5 Mitogen-activated protein kinase 8 2.7.11.24

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4l7f 1V5Mitogen-activated protein kinase 8 2.7.11.24 1.132
4fkr 45KCyclin-dependent kinase 2 2.7.11.22 0.676
2rku R78Serine/threonine-protein kinase PLK1 2.7.11.21 0.669
3ggf GVDSerine/threonine-protein kinase 26 / 0.667
3cjg KIMVascular endothelial growth factor receptor 2 2.7.10.1 0.651