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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4l4d CAM Camphor 5-monooxygenase 1.14.15.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4l4d CAMCamphor 5-monooxygenase 1.14.15.1 0.831
1o76 CAMCamphor 5-monooxygenase 1.14.15.1 0.806
2a1o CAMCamphor 5-monooxygenase 1.14.15.1 0.786
2a1n CAMCamphor 5-monooxygenase 1.14.15.1 0.778
1iwi CAMCamphor 5-monooxygenase 1.14.15.1 0.768
1noo CAHCamphor 5-monooxygenase 1.14.15.1 0.757
3cpp CAMCamphor 5-monooxygenase 1.14.15.1 0.756
1t87 CAMCamphor 5-monooxygenase 1.14.15.1 0.753
4l49 CAMCamphor 5-monooxygenase 1.14.15.1 0.749
1efz PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.744
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
1m3q ANGN-glycosylase/DNA lyase 3.2.2 0.744
1v2h GUNPurine nucleoside phosphorylase 2.4.2.1 0.744
2puc GUNHTH-type transcriptional repressor PurR / 0.744
4e5i 0N9Polymerase acidic protein / 0.744
4e5l DBHPolymerase acidic protein / 0.744
4ek9 EP4Histone-lysine N-methyltransferase, H3 lysine-79 specific 2.1.1.43 0.744
2qbn CAMCamphor 5-monooxygenase 1.14.15.1 0.735
2cpp CAMCamphor 5-monooxygenase 1.14.15.1 0.719
1uyu CAMCamphor 5-monooxygenase 1.14.15.1 0.714
1dz4 CAMCamphor 5-monooxygenase 1.14.15.1 0.712
3l63 CAMCamphor 5-monooxygenase 1.14.15.1 0.711
1t88 CAMCamphor 5-monooxygenase 1.14.15.1 0.710
2m56 CAMCamphor 5-monooxygenase 1.14.15.1 0.710
2a1m CAMCamphor 5-monooxygenase 1.14.15.1 0.707
3wrj CAMCamphor 5-monooxygenase 1.14.15.1 0.701
2qbl CAMCamphor 5-monooxygenase 1.14.15.1 0.698
3wrh CAMCamphor 5-monooxygenase 1.14.15.1 0.698
2qbo CAMCamphor 5-monooxygenase 1.14.15.1 0.697
1t85 CAMCamphor 5-monooxygenase 1.14.15.1 0.691
2z97 CAMCamphor 5-monooxygenase 1.14.15.1 0.686
4g3r CAMCamphor 5-monooxygenase 1.14.15.1 0.684
6cp4 CAMCamphor 5-monooxygenase 1.14.15.1 0.684
3lxi CAMCytochrome P450 / 0.679
3wrm CAMCamphor 5-monooxygenase 1.14.15.1 0.674
4l4e CAMCamphor 5-monooxygenase 1.14.15.1 0.674
1yrc CAMCamphor 5-monooxygenase 1.14.15.1 0.669
4c9p CAMCytochrome P450 / 0.668
1t86 CAMCamphor 5-monooxygenase 1.14.15.1 0.662
1ozq PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
1p0e PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
1ulb GUNPurine nucleoside phosphorylase 2.4.2.1 0.660
2z1x PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
3bld PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
4e5f 0N7Polymerase acidic protein / 0.660
4hqv QEIQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
4hvx QEIQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
1phg MYTCamphor 5-monooxygenase 1.14.15.1 0.658
4l4c CAMCamphor 5-monooxygenase 1.14.15.1 0.654
3fwj CAMCamphor 5-monooxygenase 1.14.15.1 0.653