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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4l2o NAD Aldehyde dehydrogenase, dimeric NADP-preferring

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4l2o NADAldehyde dehydrogenase, dimeric NADP-preferring / 1.151
4i8p NADAminoaldehyde dehydrogenase 1 / 0.767
4a0m NADBetaine aldehyde dehydrogenase, chloroplastic 1.2.1.8 0.694
4v37 NADBetaine aldehyde dehydrogenase, chloroplastic 1.2.1.8 0.692
4gnz NAPCytosolic 10-formyltetrahydrofolate dehydrogenase 1.5.1.6 0.679
1a4z NADAldehyde dehydrogenase, mitochondrial 1.2.1.3 0.669
3rhq NAPCytosolic 10-formyltetrahydrofolate dehydrogenase 1.5.1.6 0.665
3rhr NDPCytosolic 10-formyltetrahydrofolate dehydrogenase 1.5.1.6 0.660