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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4kxn 6K6 2'-deoxynucleoside 5'-phosphate N-hydrolase 1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4kxn 6K62'-deoxynucleoside 5'-phosphate N-hydrolase 1 / 1.034
4kxl 6C62'-deoxynucleoside 5'-phosphate N-hydrolase 1 / 0.832
4fyh TR52'-deoxynucleoside 5'-phosphate N-hydrolase 1 / 0.793
4yb7 ATPATP phosphoribosyltransferase / 0.666
3zwx AV1ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase 3.2.2.6 0.651