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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4kww PHT Nicotinate-nucleotide pyrophosphorylase [carboxylating] 2.4.2.19

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4kww PHTNicotinate-nucleotide pyrophosphorylase [carboxylating] 2.4.2.19 0.975
5ayz NCNNicotinate-nucleotide pyrophosphorylase [carboxylating] 2.4.2.19 0.780
1qap NTMNicotinate-nucleotide pyrophosphorylase [carboxylating] 2.4.2.19 0.658
4nke IPEFarnesyl pyrophosphate synthase 2.5.1.10 0.656
3h06 VBPGlutamate receptor 2 / 0.655
1toi HCIAspartate aminotransferase 2.6.1.1 0.652