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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4ksg 920 DNA gyrase subunit B

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4ksg 920DNA gyrase subunit B / 1.069
4k4o DOODNA gyrase subunit B / 1.007
4ksh HTTDNA gyrase subunit B / 0.803
4hxw 1A0DNA gyrase subunit B / 0.790
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
4e5i 0N9Polymerase acidic protein / 0.744
4ggl CJCDNA gyrase subunit B / 0.712
2ye9 2D4Heat shock protein HSP 90-alpha / 0.671
4e5f 0N7Polymerase acidic protein / 0.660
3inw JZBHeat shock protein HSP 90-alpha / 0.658
4lpb 1YPDNA topoisomerase 4 subunit B / 0.651